Re: More SNP stuff

From: Michael Cooley <michael_at_newsummer.com>
Date: Fri, 28 Jun 2013 12:51:37 -0700

Apart from word-wrap problems, this is a little cleaner. It's sorted
alphabetically but, because of the naming conventions for haplogroups, it
does look somewhat hierarchical. The "E" subclades are clearly statistical
anomalies. To know what I mean, scroll down to the R's to see how they
neatly "descend" from one to another. Eventually, I'll do one in tree
fashion, but not now.

To reiterate, these are that portion of Don's Y chromosome SNPs (ten of
thousands) that have been recognized by ISOGG as having mutations that
have been shown to be associated with haplogroups. The list of these
markers grows steadily as new results are analyzed--and new haplogroups
are created. This means that you can directly contribute to the research
by purchasing a test kit.

Once again, Don's "terminal SNP"--the one that has no known matching
mutations downstream from it, is L448, the "Young Norwegian" mutation.
Because of the male-descent inheritance of the Y chromosome, if I were to
do this same Geno 2.0 test, the results would look almost identical to
Don's. That would be true for Jim, etc.

A Investigation: V167 V194 V81
A0: V190
A0a1: V150
A1: V168 V174 V241 V250
A1b1a1: M141
B Investigation: V234 V237 V244
BT: L440 M42 M94 PF302 V102 V187 V29 V59
CT: M168 M294
D2a1b: IMS-JST022457
E Investigation: L635
E1b1a1a1g1b: P59
E1b1a1a1g1d: V39
E1b1a1a1h: P269
E1b1b1a1b7: L250
E1b1b1b1a2a: M165
F: M235 M89 P135 P136 P138 P14 P141 P146 P148 P151 P158 P159 P160 P166 P187
F1: P91
G Investigation: L379 PF3186 PF3358
H2a: P80
H2b: P266
I1a2: Z58
I1a2a1: Z62
I2a2a: P222
I2a2a1: CTS616
IJK: L15 L16
K: P128 P131 P132
K xLT: M526
N1c2b2: L665
O Investigation: L681
O2: L463
O3: P198
O3a1c1: P103
O3a2: F525
P: L471 L768 L779 L781 M45 P226 P228 P230 P235 P237 P240 P243 P244 P281
P282 P283 P284 P295 YSC0000251
Q Investigation: F1522 F2851
R: M207 P229 P232 P280 P285
R Investigation: CTS7275 Z48
R1: P225 P233 P236 P238 P242 P245 P286
R1a: L145 L62 L63
R1a1: L122 M459
R1a1a: L168 M198 M512
R1a1a1: L457 M417
R1a1a1b1: Z283
R1a1a1b1a: Z282
R1a1a1b1a3a: L448
R1b Investigation: L343 Z222
R1b Private: M37
R1b1a2a1a2a1b1: Z262
R2a1a: L294

> I grabbed an online page and formatted a copy for use as a database. I
> then ran Don's data through it and got this. We've got SNPs associated
> with a lot of haplogroups. But as you scroll down you'll see clearly why
> we're R1a1a1b1a3a.
>
> "Investigation" means they're thinking about it. The left is the
> haplogroup and the right is the SNP which has that itsy-bitsy mutation
> that occurred thousands of years ago. All of these, by the way, are
> positive for the mutation.
>
> Clearly we're R1a1a1b1a3a, R-L488 for short. But this demonstrates why the
> weird haplogroup names are important.
>
> A Investigation: V167
> A Investigation: V194
> A Investigation: V81
> A0: V190
> A0a1: V150
> A1: V168
> A1: V174
> A1: V241
> A1: V250
> A1b1a1: M141
> B Investigation: V234
> B Investigation: V237
> B Investigation: V244
> BT: L440
> BT: M42
> BT: M94
> BT: PF302
> BT: V102
> BT: V187
> BT: V29
> BT: V59
> CT: M168
> CT: M294
> D2a1b: IMS-JST022457
> E Investigation: L635
> E1b1a1a1g1b: P59
> E1b1a1a1g1d: V39
> E1b1a1a1h: P269
> E1b1b1a1b7: L250
> E1b1b1b1a2a: M165
> F: M235
> F: M89
> F: P135
> F: P136
> F: P138
> F: P14
> F: P141
> F: P146
> F: P148
> F: P151
> F: P158
> F: P159
> F: P160
> F: P166
> F: P187
> F1: P91
> G Investigation: L379
> G Investigation: PF3186
> G Investigation: PF3358
> H2a: P80
> H2b: P266
> I1a2: Z58
> I1a2a1: Z62
> I2a2a: P222
> I2a2a1: CTS616
> IJK: L15
> IJK: L16
> K: P128
> K: P131
> K: P132
> K xLT: M526
> N1c2b2: L665
> O Investigation: L681
> O2: L463
> O3: P198
> O3a1c1: P103
> O3a2: F525
> P: L471
> P: L768
> P: L779
> P: L781
> P: M45
> P: P226
> P: P228
> P: P230
> P: P235
> P: P237
> P: P240
> P: P243
> P: P244
> P: P281
> P: P282
> P: P283
> P: P284
> P: P295
> P: YSC0000251
> Q Investigation: F1522
> Q Investigation: F2851
> R: M207
> R: P229
> R: P232
> R: P280
> R: P285
> R Investigation: CTS7275
> R Investigation: Z48
> R1: P225
> R1: P233
> R1: P236
> R1: P238
> R1: P242
> R1: P245
> R1: P286
> R1a: L145
> R1a: L62
> R1a: L63
> R1a1: L122
> R1a1: M459
> R1a1a: L168
> R1a1a: M198
> R1a1a: M512
> R1a1a1: L457
> R1a1a1: M417
> R1a1a1b1: Z283
> R1a1a1b1a: Z282
> R1a1a1b1a3a: L448
> R1b Investigation: L343
> R1b Investigation: Z222
> R1b Private: M37
> R1b1a2a1a2a1b1: Z262
> R2a1a: L294
>
> --
> <a href="http://newsummer.com/distlist">distlist 0.9</a>
> See http://ancestraldata.com/listarchive/johncooleylist/ for list
> information.
>


-- 
Second VP, the Cooley Family Association of America
Administrator, the Akins DNA Project
Administrator, the Ashenhurst DNA Project
Administrator, the Bishop DNA Project
Administrator, the Eldridge DNA Project
Administrator, the alt-McDowell DNA Project
Co-Administrator, the Cooley DNA Project
Co-Administrator, the McDougall DNA Project
Instructor "Genealogy and Family History," the Osher Lifelong Learning
Institute (OLLI)
B.A. Humboldt State University, History
Received on Fri Jun 28 2013 - 13:51:40 MDT

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